Package: inDAGO
Title: A GUI for Dual and Bulk RNA-Sequencing Analysis
Version: 1.0.3
Authors@R: c(
    person("Carmine", "Fruggiero", , "fruggierocarmine3@gmail.com", role = c("aut","cre")),
    person("Gaetano", "Aufiero", , "gaetano.aufiero@gmail.com", role = "aut")
  )
Description: A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
    RNA-seq functionality offering the flexibility to perform either a
    sequential approach (where reads are mapped separately to each genome)
    or a combined approach (where reads are aligned to a single merged
    genome). The user-friendly interface automates the analysis process,
    providing step-by-step guidance, making it easy for users to navigate
    between different analysis steps, and download intermediate results
    and publication-ready plots.
License: GPL (>= 3)
URL: https://github.com/inDAGOverse/inDAGO
BugReports: https://github.com/inDAGOverse/inDAGO/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: bigtabulate, bsicons, bslib, callr, checkmate, data.table,
        dplyr, DT, fs, ggplot2, ggrepel, grDevices, heatmaply, Hmisc,
        htmltools, magrittr, matrixStats, memuse, methods, paletteer,
        parallel, pheatmap, plotly, R.devices, readr, reshape2,
        rintrojs, seqinr, shiny, shinycssloaders, shinyFiles, shinyjs,
        shinyWidgets, spsComps, stats, svglite, tibble, tidyr, tools,
        upsetjs, UpSetR, utils
Suggests: BiocGenerics, BiocManager, Biostrings, edgeR, harrypotter,
        HTSFilter, limma, oompaBase, palr, Rsamtools, Rsubread,
        rtracklayer, S4Vectors, ShortRead, testthat (>= 3.0.0), XVector
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-10-21 13:38:25 UTC; gaeta
Author: Carmine Fruggiero [aut, cre],
  Gaetano Aufiero [aut]
Maintainer: Carmine Fruggiero <fruggierocarmine3@gmail.com>
Repository: CRAN
Date/Publication: 2025-10-21 14:00:02 UTC
Built: R 4.4.3; ; 2026-02-02 05:10:03 UTC; windows
