Package: SoilR
Title: Models of Soil Organic Matter Decomposition
Version: 1.2.107
Date: 2023-10-13
Author: Carlos A. Sierra, Markus Mueller
Maintainer: Carlos A. Sierra <csierra@bgc-jena.mpg.de>
Description: Functions for modeling Soil Organic Matter decomposition
        in terrestrial ecosystems with linear and nonlinear systems of differential equations. 
        The package implements
        models according to the compartmental system representation described in 
        Sierra and others (2012) <doi:10.5194/gmd-5-1045-2012> and Sierra and others (2014)
        <doi:10.5194/gmd-7-1919-2014>.
License: GPL-3
Depends: R (>= 3.5.0), deSolve,methods
Imports: igraph,assertthat,parallel,expm,sets,purrr
Suggests: FME,lattice,MASS,knitr,rmarkdown,getopt,tinytex
LazyData: TRUE
Collate: setGlobalVariables.R setOldClasses.R genericFunctions.R
        S4ClassDefinitions.R TimeMap.R ScalarTimeMap.R PoolId.R
        PoolIndex.R PoolName.R InFlux_by_PoolIndex.R
        InFlux_by_PoolName.R OutFlux_by_PoolIndex.R
        OutFlux_by_PoolName.R InternalFlux_by_PoolIndex.R
        InternalFlux_by_PoolName.R PoolConnection_by_PoolIndex.R
        PoolConnection_by_PoolName.R ConstantInFluxRate_by_PoolIndex.R
        ConstantInFluxRate_by_PoolName.R InFluxes.R ConstInFluxes.R
        ConstantInFlux_by_PoolIndex.R
        ConstantInternalFluxRate_by_PoolIndex.R
        ConstantInternalFluxRate_by_PoolName.R
        ConstantOutFluxRate_by_PoolIndex.R
        ConstantOutFluxRate_by_PoolName.R InFluxList_by_PoolIndex.R
        InFluxList_by_PoolName.R
        StateIndependentInFluxList_by_PoolIndex.R
        StateDependentInFluxVector.R OutFluxList_by_PoolIndex.R
        OutFluxList_by_PoolName.R InternalFluxList_by_PoolIndex.R
        InternalFluxList_by_PoolName.R
        ConstantInFluxList_by_PoolIndex.R
        ConstantInternalFluxRateList_by_PoolIndex.R
        ConstantInternalFluxRateList_by_PoolName.R
        ConstantOutFluxRateList_by_PoolIndex.R
        ConstantOutFluxRateList_by_PoolName.R Fc.R HelperFunctions.R
        BoundInFluxes.R deSolve.lsoda.wrapper.R
        RespirationCoefficients.R TransportDecompositionOperator.R
        SoilR.F0__deprecated_in_1.2.R MCSim.R DecompOp.R
        UnboundInflux.R UnBoundLinDecompOp.R BoundLinDecompOp.R
        UnBoundNonLinDecompOp.R
        DecompositionOperator_deprecated_in_1.2.R Model_by_PoolNames.R
        Model.R Model_14.R NlModel.R AutonomousLinearModel.R
        NonAutonomousLinearModel.R AWBmodel.R bacwaveModel.R
        bind.C14curves.R BoundFc.R CenturyModel.R ConstFc.R
        ConstLinDecompOp.R ConstLinDecompOpWithLinearScaleFactor.R
        SymbolicModel_by_PoolName.R
        UnBoundNonLinDecompOp_by_PoolNames.R cycling.R euler.R
        example.2DBoundInFluxesFromFunction.R
        example.2DBoundLinDecompOpFromFunction.R
        example.2DConstFC.Args.R example.2DConstInFluxesFromVector.R
        example.2DGeneralDecompOpArgs.R example.2DInFluxes.Args.R
        example.2DUnBoundLinDecompOp.R
        example.BoundLinDecompOpFromFunction.R
        example.ConstlinDecompOpFromMatrix.R
        example.nestedTime2DMatrixList.R
        example.nestedTime3DArrayList.R example.Time2DArrayList.R
        example.Time3DArrayList.R example.TimeMapFromArray.R
        FcAtm_deprecated_in_1.2.R fT.Arrhenius.R fT.Century1.R
        fT.Century2.R fT.Daycent1.R fT.Daycent2.R fT.Demeter.R fT.KB.R
        fT.LandT.R fT.linear.R fT.Q10.R fT.RothC.R fT.Standcarb.R
        function.R fW.Candy.R fW.Century.R fW.Daycent1.R fW.Daycent2.R
        fW.Demeter.R fW.Gompertz.R fW.Moyano.R fW.RothC.R fW.Skopp.R
        fW.Standcarb.R GeneralModel.R GaudinskiModel14.R
        GeneralModel_14.R GeneralNlModel.R ICBMModel.R linesCPool.R
        linMaker.R list.R listProduct.R makelink.R MeanAge.R MeanTT.R
        NpYdot.R OnepModel.R OnepModel14.R ParallelModel.R
        plotC14Pool.R plotCPool.R RothCModel.R SeriesLinearModel.R
        SeriesLinearModel14.R solver.R spectralNorm.R systemAge.R
        ThreepairMMmodel.R ThreepFeedbackModel.R
        ThreepFeedbackModel14.R ThreepParallelModel.R
        ThreepParallelModel14.R ThreepSeriesModel.R
        ThreepSeriesModel14.R transitTime.R tupelList.R turnoverFit.R
        makeListInstance.R pe.R pp.R plotPoolGraphFromTupleLists.R
        checkTargetClassOfElements.R TimeRangeIntersection.R
        TwopFeedbackModel.R TwopFeedbackModel14.R TwopMMmodel.R
        TwopParallelModel.R TwopParallelModel14.R TwopSeriesModel.R
        TwopSeriesModel14.R vecFuncMaker.R warnings.R Yasso07Model.R
        scalarFuncMaker.R apply_to_state_and_time.R YassoModel.R
        C14Atm_NH.R C14Atm.R Hua2013.R IntCal09.R IntCal13.R
        Graven2017.R IntCal20.R SHCal20.R incubation_experiment.R
        HarvardForest14CO2.R getTransferMatrix.R SoilR-package.R
        IVP_maker.R ydot_maker.R ICBM_N.R linearScalarModel.R
        CenturyModel14.R pathEntropy.R entropyRatePerJump.R
        entropyRatePerTime.R Hua2021.R
RoxygenNote: 7.2.3.9000
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2023-10-13 11:23:22 UTC; csierra
Repository: CRAN
Date/Publication: 2023-10-13 12:40:06 UTC
Built: R 4.6.0; ; 2026-01-24 03:44:05 UTC; windows
