# Signature Overrepresentation Analysis

## Documentation for package ‘sigora’ version 3.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

genesFromRandomPathways | Function to randomly select genes associated with randomly pathways.
getGenes | List genes involved in present GPS for a specific pathway in the summary_results
getURL | Highlight the relevant genes for a specific pathway in its pathway diagram
idmap | Identifier mappings for protein coding genes.
kegH | Pathway GPS data, extracted from KEGG repository (Human).
kegM | Pathway GPS data, extracted from KEGG repository (Mouse).
load_data | load and return data when lazyLoad false insted of using data(datastr)
makeGPS | Create your own Signature Object.
nciTable | NCI human gene-pathway associations.
ora | Traditional Overrepresentation Analysis.
reaH | Pathway GPS data, extracted from the Reactome repository (Human).
reaM | Pathway GPS data, extracted from Reactome repository (Mouse).
sigora | Sigora's main function.